Source code for torch_geometric.nn.conv.gatv2_conv

from typing import Optional, Tuple, Union

import torch
import torch.nn.functional as F
from torch import Tensor
from torch.nn import Parameter
from torch_sparse import SparseTensor, set_diag

from torch_geometric.nn.conv import MessagePassing
from torch_geometric.nn.dense.linear import Linear
from torch_geometric.nn.inits import glorot, zeros
from torch_geometric.typing import Adj, OptTensor, PairTensor
from torch_geometric.utils import add_self_loops, remove_self_loops, softmax

[docs]class GATv2Conv(MessagePassing): r"""The GATv2 operator from the `"How Attentive are Graph Attention Networks?" <>`_ paper, which fixes the static attention problem of the standard :class:`~torch_geometric.conv.GATConv` layer. Since the linear layers in the standard GAT are applied right after each other, the ranking of attended nodes is unconditioned on the query node. In contrast, in :class:`GATv2`, every node can attend to any other node. .. math:: \mathbf{x}^{\prime}_i = \alpha_{i,i}\mathbf{\Theta}\mathbf{x}_{i} + \sum_{j \in \mathcal{N}(i)} \alpha_{i,j}\mathbf{\Theta}\mathbf{x}_{j}, where the attention coefficients :math:`\alpha_{i,j}` are computed as .. math:: \alpha_{i,j} = \frac{ \exp\left(\mathbf{a}^{\top}\mathrm{LeakyReLU}\left(\mathbf{\Theta} [\mathbf{x}_i \, \Vert \, \mathbf{x}_j] \right)\right)} {\sum_{k \in \mathcal{N}(i) \cup \{ i \}} \exp\left(\mathbf{a}^{\top}\mathrm{LeakyReLU}\left(\mathbf{\Theta} [\mathbf{x}_i \, \Vert \, \mathbf{x}_k] \right)\right)}. If the graph has multi-dimensional edge features :math:`\mathbf{e}_{i,j}`, the attention coefficients :math:`\alpha_{i,j}` are computed as .. math:: \alpha_{i,j} = \frac{ \exp\left(\mathbf{a}^{\top}\mathrm{LeakyReLU}\left(\mathbf{\Theta} [\mathbf{x}_i \, \Vert \, \mathbf{x}_j \, \Vert \, \mathbf{e}_{i,j}] \right)\right)} {\sum_{k \in \mathcal{N}(i) \cup \{ i \}} \exp\left(\mathbf{a}^{\top}\mathrm{LeakyReLU}\left(\mathbf{\Theta} [\mathbf{x}_i \, \Vert \, \mathbf{x}_k \, \Vert \, \mathbf{e}_{i,k}] \right)\right)}. Args: in_channels (int or tuple): Size of each input sample, or :obj:`-1` to derive the size from the first input(s) to the forward method. A tuple corresponds to the sizes of source and target dimensionalities. out_channels (int): Size of each output sample. heads (int, optional): Number of multi-head-attentions. (default: :obj:`1`) concat (bool, optional): If set to :obj:`False`, the multi-head attentions are averaged instead of concatenated. (default: :obj:`True`) negative_slope (float, optional): LeakyReLU angle of the negative slope. (default: :obj:`0.2`) dropout (float, optional): Dropout probability of the normalized attention coefficients which exposes each node to a stochastically sampled neighborhood during training. (default: :obj:`0`) add_self_loops (bool, optional): If set to :obj:`False`, will not add self-loops to the input graph. (default: :obj:`True`) edge_dim (int, optional): Edge feature dimensionality (in case there are any). (default: :obj:`None`) fill_value (float or Tensor or str, optional): The way to generate edge features of self-loops (in case :obj:`edge_dim != None`). If given as :obj:`float` or :class:`torch.Tensor`, edge features of self-loops will be directly given by :obj:`fill_value`. If given as :obj:`str`, edge features of self-loops are computed by aggregating all features of edges that point to the specific node, according to a reduce operation. (:obj:`"add"`, :obj:`"mean"`, :obj:`"min"`, :obj:`"max"`, :obj:`"mul"`). (default: :obj:`"mean"`) bias (bool, optional): If set to :obj:`False`, the layer will not learn an additive bias. (default: :obj:`True`) share_weights (bool, optional): If set to :obj:`True`, the same matrix will be applied to the source and the target node of every edge. (default: :obj:`False`) **kwargs (optional): Additional arguments of :class:`torch_geometric.nn.conv.MessagePassing`. Shapes: - **input:** node features :math:`(|\mathcal{V}|, F_{in})` or :math:`((|\mathcal{V_s}|, F_{s}), (|\mathcal{V_t}|, F_{t}))` if bipartite, edge indices :math:`(2, |\mathcal{E}|)`, edge features :math:`(|\mathcal{E}|, D)` *(optional)* - **output:** node features :math:`(|\mathcal{V}|, H * F_{out})` or :math:`((|\mathcal{V}_t|, H * F_{out})` if bipartite. If :obj:`return_attention_weights=True`, then :math:`((|\mathcal{V}|, H * F_{out}), ((2, |\mathcal{E}|), (|\mathcal{E}|, H)))` or :math:`((|\mathcal{V_t}|, H * F_{out}), ((2, |\mathcal{E}|), (|\mathcal{E}|, H)))` if bipartite """ _alpha: OptTensor def __init__( self, in_channels: Union[int, Tuple[int, int]], out_channels: int, heads: int = 1, concat: bool = True, negative_slope: float = 0.2, dropout: float = 0.0, add_self_loops: bool = True, edge_dim: Optional[int] = None, fill_value: Union[float, Tensor, str] = 'mean', bias: bool = True, share_weights: bool = False, **kwargs, ): super().__init__(node_dim=0, **kwargs) self.in_channels = in_channels self.out_channels = out_channels self.heads = heads self.concat = concat self.negative_slope = negative_slope self.dropout = dropout self.add_self_loops = add_self_loops self.edge_dim = edge_dim self.fill_value = fill_value self.share_weights = share_weights if isinstance(in_channels, int): self.lin_l = Linear(in_channels, heads * out_channels, bias=bias, weight_initializer='glorot') if share_weights: self.lin_r = self.lin_l else: self.lin_r = Linear(in_channels, heads * out_channels, bias=bias, weight_initializer='glorot') else: self.lin_l = Linear(in_channels[0], heads * out_channels, bias=bias, weight_initializer='glorot') if share_weights: self.lin_r = self.lin_l else: self.lin_r = Linear(in_channels[1], heads * out_channels, bias=bias, weight_initializer='glorot') self.att = Parameter(torch.Tensor(1, heads, out_channels)) if edge_dim is not None: self.lin_edge = Linear(edge_dim, heads * out_channels, bias=False, weight_initializer='glorot') else: self.lin_edge = None if bias and concat: self.bias = Parameter(torch.Tensor(heads * out_channels)) elif bias and not concat: self.bias = Parameter(torch.Tensor(out_channels)) else: self.register_parameter('bias', None) self._alpha = None self.reset_parameters()
[docs] def reset_parameters(self): self.lin_l.reset_parameters() self.lin_r.reset_parameters() if self.lin_edge is not None: self.lin_edge.reset_parameters() glorot(self.att) zeros(self.bias)
[docs] def forward(self, x: Union[Tensor, PairTensor], edge_index: Adj, edge_attr: OptTensor = None, return_attention_weights: bool = None): # type: (Union[Tensor, PairTensor], Tensor, OptTensor, NoneType) -> Tensor # noqa # type: (Union[Tensor, PairTensor], SparseTensor, OptTensor, NoneType) -> Tensor # noqa # type: (Union[Tensor, PairTensor], Tensor, OptTensor, bool) -> Tuple[Tensor, Tuple[Tensor, Tensor]] # noqa # type: (Union[Tensor, PairTensor], SparseTensor, OptTensor, bool) -> Tuple[Tensor, SparseTensor] # noqa r""" Args: return_attention_weights (bool, optional): If set to :obj:`True`, will additionally return the tuple :obj:`(edge_index, attention_weights)`, holding the computed attention weights for each edge. (default: :obj:`None`) """ H, C = self.heads, self.out_channels x_l: OptTensor = None x_r: OptTensor = None if isinstance(x, Tensor): assert x.dim() == 2 x_l = self.lin_l(x).view(-1, H, C) if self.share_weights: x_r = x_l else: x_r = self.lin_r(x).view(-1, H, C) else: x_l, x_r = x[0], x[1] assert x[0].dim() == 2 x_l = self.lin_l(x_l).view(-1, H, C) if x_r is not None: x_r = self.lin_r(x_r).view(-1, H, C) assert x_l is not None assert x_r is not None if self.add_self_loops: if isinstance(edge_index, Tensor): num_nodes = x_l.size(0) if x_r is not None: num_nodes = min(num_nodes, x_r.size(0)) edge_index, edge_attr = remove_self_loops( edge_index, edge_attr) edge_index, edge_attr = add_self_loops( edge_index, edge_attr, fill_value=self.fill_value, num_nodes=num_nodes) elif isinstance(edge_index, SparseTensor): if self.edge_dim is None: edge_index = set_diag(edge_index) else: raise NotImplementedError( "The usage of 'edge_attr' and 'add_self_loops' " "simultaneously is currently not yet supported for " "'edge_index' in a 'SparseTensor' form") # propagate_type: (x: PairTensor, edge_attr: OptTensor) out = self.propagate(edge_index, x=(x_l, x_r), edge_attr=edge_attr, size=None) alpha = self._alpha self._alpha = None if self.concat: out = out.view(-1, self.heads * self.out_channels) else: out = out.mean(dim=1) if self.bias is not None: out = out + self.bias if isinstance(return_attention_weights, bool): assert alpha is not None if isinstance(edge_index, Tensor): return out, (edge_index, alpha) elif isinstance(edge_index, SparseTensor): return out, edge_index.set_value(alpha, layout='coo') else: return out
def message(self, x_j: Tensor, x_i: Tensor, edge_attr: OptTensor, index: Tensor, ptr: OptTensor, size_i: Optional[int]) -> Tensor: x = x_i + x_j if edge_attr is not None: if edge_attr.dim() == 1: edge_attr = edge_attr.view(-1, 1) assert self.lin_edge is not None edge_attr = self.lin_edge(edge_attr) edge_attr = edge_attr.view(-1, self.heads, self.out_channels) x = x + edge_attr x = F.leaky_relu(x, self.negative_slope) alpha = (x * self.att).sum(dim=-1) alpha = softmax(alpha, index, ptr, size_i) self._alpha = alpha alpha = F.dropout(alpha, p=self.dropout, return x_j * alpha.unsqueeze(-1) def __repr__(self) -> str: return (f'{self.__class__.__name__}({self.in_channels}, ' f'{self.out_channels}, heads={self.heads})')